Ok, i found, what was a problem - I am mounting volumes "by hand" as early prepared or already existing but assigning new Zentyal. The problem was that i did not mount them with proper acl option. The right way is:
mount -o rw,acl,user_xattr,usrquota,grpquota -L "volumelabel" /mountpoint
or
mount -o rw,acl,user_xattr,usrquota,grpquota /dev/md0 /mountpoint
or in fstab same way as / volume
But...
it does not resolve problems with ACL change when try to change it from dashboard - existing files ACL's are not changing to proper one to give right permisions to files (it worked fine on Zential 2.2)