Hi Elliott!
eBox can indeed replace your AD for authentication and file sharing.
eBox can work as a PDC so you can configure other Windows machines to be authenticated against it. In addition, starting with the upcoming 1.4 release (to be released in ~6 months, but with working alphas almost ready) you can set up a master eBox and a few slave eBoxes that replicate parts of the master LDAP (users and groups, but not service-specific data) allowing you to easily have your services distributed among several eBoxes.
Right now we don't have anything in place to facilitate the backup LDAP server. You would have to do that manually, probably using another eBox and syncrepl to replicate the LDAP.
If you install a slave eBox (remember that that is only available in the development 1.3 series) you will get a replica of the users but not of the Samba parts, so that wouldn't be too useful.
In any case it sounds like a nice feature to have and we will look into it.